PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G118500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 182aa    MW: 20827.8 Da    PI: 9.8355
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G118500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.46.8e-101464555
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                        + +Er+RR r++   ++L + +Pk     ++  ls  + Le+A  YI++Lq
  Aqcoe3G118500.1.p 14 RKTVERNRRIRMKALCSKLASFIPKhH-ISHKDTLSQQDRLEHAAAYINDLQ 64
                       5789*********************55.445555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.724963IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-6968No hitNo description
SuperFamilySSF474591.57E-101186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-91267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-71564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00461569IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEKKNNSDSS KVDRKTVERN RRIRMKALCS KLASFIPKHH ISHKDTLSQQ DRLEHAAAYI  60
NDLQQRIESL KRKKEFLLGN NGSSNDHHAH INPMWDGIRL PLLELRDMES TLEVILISSI  120
HKNFMFYQVI NILEEEGADV VNAGFSTVGD KVFHTIHSQV TSSRVGVETA RLFQRLKELV  180
N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579413.16e-73PREDICTED: uncharacterized protein LOC8289025
TrEMBLB9RB436e-70B9RB43_RICCO; DNA binding protein, putative
STRINGPOPTR_0012s08050.12e-66(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-31bHLH family protein